> next up previous
Next: Figures Up: The Information Content of Previous: Bibliography

REFERENCES

Abramson, N. (1963). Information Theory and Coding, McGraw-Hill Book Co., New York.

An, G., Bendiak, D.S., Mamelak, L.A. and Friesen, J.D. (1981). Nucl. Acid Res. 9, 4163-4172.

An, G. and Friesen, J.D. (1980). Gene. 12, 33-39.

Bachmann, B.J. and Low, K.B. (1980). Microb. Rev. 44, 1-56.

Backendorf, C., Brandsma, J.A., Kartasova, T. and van de Putte, P. (1983). Nucl. Acids Res. 11, 5795-5810.

Basharin, G.P. (1959). Theory Probability Appl., 4, 333-336.

Beckwith, J.R. (1978). The Operon, eds. Miller, J.H. and Reznikoff, W.S., Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, pp. 11-30.

Bennett, G.N., Schweingruber, M.E., Brown, K.D., Squires, C. and Yanofsky, C. (1976). Proc. Natl. Acad. Sci., U. S. A. 73, 2351-2355.

Bennett, G.N. and Yanofsky, C. (1978). J. Mol. Biol. 121, 179-192.

Bertrand, K., Squires, C. and Yanofsky, C. (1976). J. Mol. Biol. 103, 319-337.

Bogosian, G., Bertrand, K. and Somerville, R. (1981). J. Mol. Biol. 149, 821-825.

Bogosian, G. and Somerville, R. (1983). Mol. Gen. Genet. 191, 51-58.

Brandsma, J.A., Bosch, D., Backendorf, C. and van de Putte, P. (1983). Nature (London). 305, 243-245.

Breiman, L. (1969). Probability and Stochastic Processes, with a View Toward Applications, Houghton Mifflin Co., Boston.

Brent, R. and Ptashne, M. (1981). Proc. Natl. Acad. Sci., U. S. A. 78, 4204-4208.

Burton, Z., Burgess, R.R., Lin, J., Moore, D., Holder, S. and Gross, C.A. (1981). Nucl. Acid Res. 9, 2889-2903.

Campbell, J. (1982). Grammatical Man: Information, Entropy, Language, and Life, Simon and Schuster, New York.

Carter, A.D., Morris, C.E. and McAllister, W.T. (1981). J. Virol. 37, 636-642.

Center, M.S., Studier, F.W. and Richardson, C.C. (1970). Proc. Natl. Acad. Sci., U. S. A. 65, 242-248.

Chamberlin, M., McGrath, J. and Waskell, L. (1970). Nature (London). 228, 227-231.

Chamberlin, M. and Ring, J. (1973). J. Biol. Chem. 248, 2235-2244.

Chamberlin, M.J. (1974). Ann. Rev. Biochem. 43, 721-775.

Cole, S.T. (1983). Mol. Gen. Genet. 189, 400-404.

Cossart, P., Katinka, M. and Yaniv, M. (1981). Nucl. Acid Res. 9, 339-347.

Cunin, R., Eckhardt, T., Piette, J., Boyen, A., Pieacuterard, A. and Glansdorff, N. (1983). Nucl. Acids. Res. 11, 5007-5019.

Davidson, E.H., Jacobs, H.T. and Britten, R.J. (1983). Nature (London). 301, 468-470.

Dickson, R.C., Abelson, J., Barnes, W. and Reznikoff, W.S. (1975). Science. 187, 27-35.

Dunn, J.J. and Studier, F.W. (1983). J. Mol. Biol. 166, 477-535.

Dykes, G., Bambara, R., Marians, K., Wu, R. (1975). Nucl. Acids Res. 2, 327-345.

Ebina, Y., Kishi, F., Miki, T., Kagamiyama, H., Nakazawa, T. and Nakazawa, A. (1981). Gene. 15, 119-126.

Fickett, J.W. (1982). Nucl. Acids Res. 10, 5303-5318.

Flashman, S.M. (1978). Mol. Gen. Genet. 166, 61-73.

Gatlin, L.L. (1972). Information Theory and the Living System, Columbia University Press, New York.

Gicquel-Sanzey, B. and Cossart, P. (1982). EMBO J. 1, 591-595.

Gilbert, W. and Maxam, A. (1973). Proc. Natl. Acad. Sci., U. S. A. 70, 3581-3584.

Gilbert, W. and Muumlautller-Hill, B. (1970). The Lactose Operon, Beckwith, J.R. and Zipser, D., eds., Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, p. 104.

Goeddel, D.V., Yansura, D.G. and Caruthers, M.H. (1978). Proc. Natl. Acad. Sci., U. S. A. 75, 3578-3582.

Gold, L., Pribnow, D., Schneider, T., Shinedling, S., Singer, B.S. and Stormo, G. (1981). Ann. Rev. Microbiol. 35, 365-403.

Gould, S.J. (1977). Ever Since Darwin, W.W. Norton & Co., Inc., New York.

Grantham, R., Gautier, C., Gouy, M., Jacobzone, M. and Mercier, R. (1981). Nucl. Acid Res. 9, r43-r74.

Gay, N.J. and Walker, J.E. (1981a). Nucl. Acid Res. 9, 2187-2194.

Gay, N.J. and Walker, J.E. (1981b). Nucl. Acid Res. 9, 3919-3926.

Greene, P.J., Gupta, M., Boyer, H.W., Brown, W.E. and Rosenberg, J.M. (1981). J. Biol. Chem. 256, 2143-2153.

Gunsalus, R.P. and Yanofsky, C. (1980). Proc. Natl. Acad. Sci., U. S. A. 77, 7117-7121.

Harel, D. (1980). Comm. ACM. 23, 379-389.

Hawley, D.K. and McClure, W.R. (1983). Nucl. Acids Res. 11, 2237-2255.

Hesselbach, B.A. and Nakada, D. (1977a). J. Virol. 24, 736-745.

Hesselbach, B.A. and Nakada, D. (1977b). J. Virol. 24, 746-760.

Heyneker, H.L., Shine, J., Goodman, H.M., Boyer, H.W., Rosenberg, J.,

Dickerson, R.E., Narang, S.A., Itakura, K., Lin, S. and Riggs, A.D. (1976). Nature (London). 263, 748-752.

Hochschild, A., Irwin, N. and Ptashne, M. (1983). Cell. 32, 319-325.

Horii, T., Ogawa, T. and Ogawa H. (1981). Cell. 23, 689-697.

Humayun, Z., Jeffrey, A. and Ptashne, M. (1977a). J. Mol. Biol. 112, 265-277.

Humayun, Z., Kleid, D. and Ptashne, M. (1977b). Nucl. Acids Res. 4, 1595-1607.

Inouye, M., Arnheim, N. and Sternglanz, R. (1973). J. Biol. Chem. 248, 7247-7252.

Jaurin, B. and Grundström, T. (1981). Proc. Natl. Acad. Sci., U. S. A. 78, 4897-4901.

Jaurin, B., Grundström, T., Edlund, T. and Normark, S. (1981). Nature (London). 290, 221-225.

Jensen, H.B. and Pryme, I.F. (1974). Biochem. Biophys. Res. Com. 59, 1117-1123.

Jensen, K. and Wirth, N. (1978). Pascal User Manual and Report, Second Edition, Springer-Verlag, New York.

Joachimiak, A., Kelley, R.L., Gunsalus, R.P., Yanofsky, C. and Sigler, P.B. (1983). Proc. Natl. Acad. Sci., U. S. A. 80, 668-672.

Johnson, A., Meyer, B.J. and Ptashne, M. (1978). Proc. Natl. Acad. Sci., U. S. A. 75, 1783-1787.

Johnson, A.D., Meyer, B.J. and Ptashne, M. (1979). Proc. Natl. Acad. Sci., U. S. A. 76, 5061-5065.

Johnson, A.D., Poteete, A.R., Lauer, G., Sauer, R.T., Ackers, G.K. and Ptashne, M. (1981). Nature (London). 294, 217-223.

Johnson, D.I. and Somerville, R.L. (1983). J. Bact. 155, 49-55.

Kalnins, A., Otto, K., Ruumlautther, U. and Muumlautller-Hill, B. (1983). EMBO J. 2, 593-597.

Kanazawa, H., Mabuchi, K., Kayano, T., Tamura, F. and Futai, M. (1981). Biochem. and Biophys. Res. Comm. 100, 219-225.

Kenyon, C.J., Brent, R., Ptashne, M. and Walker, G.C. (1982). J. Mol. Biol. 160, 445-457.

Kerr, C. and Sadowski, P.D. (1975). Virol. 65, 281-285.

Kleid, D., Humayun, Z., Jeffrey, A. and Ptashne, M. (1976). Proc. Natl. Acad. Sci., U. S. A. 73, 293-297.

Kleppe, G., Jensen, H.B. and Pryme, I.F. (1977). Eur. J. Biochem. 76, 317-326.

Kruumlautger, D.H. and Schroeder, C. (1981). Microb. Rev. 45, 9-51.

Lin, S. and Riggs, A.D. (1975). Cell. 4, 107-111.

Lipman, D.J. and Maizel, J. (1982). Nucl. Acids Res. 10, 2723-2739.

Little, J.W., Mount, D.W. and Yanisch-Perron, C.R. (1981). Proc. Natl. Acad. Sci., U. S. A. 78, 4199-4203.

Little, J.W. and Mount, D.W. (1982). Cell. 29, 11-22.

Little, J.W. (1983). J. Mol. Biol. 167, 791-808.

Maas, W.K. and Clark, A.J. (1964). J. Mol. Biol. 8, 365-370.

Maas, W.K., Maas, R., Wiame, J.M. and Glansdorff, N. (1964). J. Mol. Biol. 8, 359-364.

Mackie, G.A. (1981). J. Biol. Chem. 256, 8177-8182.

Maniatis, T., Ptashne, M., Backman, K., Kleid, D., Flashman, S., Jeffrey, A. and Maurer, R. (1975). Cell. 5, 109-113.

Markham, B.E., Little, J.W. and Mount, D.W. (1981). Nucl. Acid Res. 9, 4149-4161.

Matthews, B.W., Ohlendorf, D.H., Anderson, W.F., Fisher, R.G., Takeda, Y. (1983). Trends Biochem. Sci. 8, 25-29.

McAllister, W.T. and Wu, H. (1978). Proc. Natl. Acad. Sci., U. S. A. 75, 804-808.

McAllister, W.T., Morris, C., Rosenberg, A.H. and Studier, F.W. (1981). J. Mol. Biol. 153, 527-544.

Meyer, B.J., Kleid, D.G. and Ptashne, M. (1975). Proc. Natl. Acad. Sci., U. S. A. 72, 4785-4789.

Meyer, B.J., Maurer, R. and Ptashne, M. (1980). J. Mol. Biol. 139, 163-194.

Miki, T., Ebina, Y., Kishi, F. and Nakazawa, A. (1981). Nucl. Acid Res. 9, 529-543.

Miller, G.A. (1955). Information Theory in Psychology,

Quastler, H., ed., Free Press, Glencoe Illinois, pp. 95-100.

Miyazaki, J., Ryo, Y., Fujisawa, H. and Minagawa, T. (1978). Virol. 89, 327-329.

Morlon, J., Lloubes, R., Chartier, M., Bonicel, J. and Lazdunski, C. (1983). EMBO J. 2, 787-789.

Mulligan, M.E., Hawley, D.K., Entriken, R., McClure, W.R. (1984). Nucl. Acid Res. 12, 789-800.

Muumlautller-Hill, B., Gronenborn, B., Kania, J., Schlotmann, M. and Beyreuther, K. (1977). Nucleic Acid-Protein Recognition, Vogel, H.J., ed., Academic Press, New York, p. 219.

Nei, M. and Li, W. (1979). Proc. Natl. Acad. Sci., U. S. A. 76, 5269-5273.

Neidhardt, F.C., Vaughn, V., Phillips, T.A. and Bloch, P.L. (1983). Microb. Rev. 47, 231-284.

Newman, A.K., Rubin, R.A., Kim, S. and Modrich, P. (1981). J. Biol. Chem. 256, 2131-2139.

Nussinov, R. (1984). Nucl. Acid Res. 12, 1749-1763.

Oakley, J.L. and Coleman, J.E. (1977). Proc. Natl. Acad. Sci., U. S. A. 74, 4266-4270.

Oakley, J.L., Strothkamp, R.E., Sarris, A.H. and Coleman, J.E. (1979). Biochem. 18, 528-537.

Oppenheim, D.S., Bennett, G.N. and Yanofsky, C. (1980). J. Mol. Biol. 144, 133-142.

Owen, J.E., Schultz, D.W., Taylor, A. and Smith, G.R. (1983). J. Mol. Biol. 165, 229-248.

Pabo, C.O., Krovatin, W., Jeffrey, A. and Sauer, R.T. (1982). Nature (London). 298, 441-443.

Pabo, C.O. and Sauer, R.T. (1984). Ann. Rev. Biochem. 53, 293-321.

Pierce, J.R. (1980). An Introduction to Information Theory: Symbols, Signals and Noise, Second Edition, Dover Publications Inc., New York.

Pingoud, A. (1985). Eur. J. Biochem. 147, 105-109.

Pribnow, D. (1979). Biological Regulation and Development,

Goldberger, R.F., ed., Plenum Press, New York, Vol. 1, pp. 219-277.

Ptashne, M., Backman, K., Humayun, M.Z., Jeffrey, A., Maurer, R., Meyer, B., and Sauer, R.T. (1976). Science. 194, 156-161.

Ptashne, M., Jeffrey, A., Johnson, A.D., Maurer, R., Meyer, B.J., Pabo, C.O., Roberts, T.M. and Sauer, R.T. (1980). Cell. 19, 1-11.

Putney, S.D., Meleacutendez, D.L. and Schimmel, P.R. (1981). J. Biol. Chem. 256, 205-211.

Reznikoff, W.S., Winter, R.B. and Hurley, C.K. (1974). Proc. Natl. Acad. Sci., U. S. A. 71, 2314-2318.

Riggs, A.D., Suzuki, H. and Bourgeois, S. (1970). J. Mol. Biol. 48, 67-83.

Roberts, R.J. (1983). Nucl. Acids Res. 11, r135-r167.

Sadler, J.R., Sasmor, H. and Betz, J.L. (1983a). Proc. Natl. Acad. Sci., U. S. A. 80, 6785-6789.

Sadler, J.R., Waterman, M.S. and Smith, T.F. (1983b). Nucl. Acids Res. 11, 2221-2231.

Sadowski, P.D. and Kerr, C. (1970). J. Virol. 6, 149-155.

Sampson, J.R. (1976). Adaptive Information Processing, Springer-Verlag, New York.

Sancar, A., Sancar, G.B., Rupp, W.D., Little, J.W. and Mount, D.W. (1982a). Nature (London). 298, 96-98.

Sancar, G.B., Sancar, A., Little, J.W. and Rupp, W.D. (1982b). Cell. 28, 523-530.

Schneider, T.D., Stormo, G.D., Haemer, J.S. and Gold, L. (1982). Nucl. Acids Res. 10, 3013-3024.

Schneider, T.D., Stormo, G.D., Yarus, M.A. and Gold, L. (1984). Nucl. Acids Res. 12, 129-140.

Schneider, T.D. (1984). Ph.D. thesis, University of Colorado.

Shalloway, D., Kleinberger, T. and Livingston, D.M. (1980). Cell. 20, 411-422.

Shannon, C.E. (1948). Bell System Tech. J. 27, 379-423, 623-656.

Shannon, C.E. (1951). Bell System Tech. J. 30, 50-64.

Shannon, C.E. and Weaver, W. (1949). The Mathematical Theory of Communication, University of Illinois Press, Urbana.

Shine, J., Dalgarno, L. (1974). Proc. Natl. Acad. Sci., U. S. A. 71, 1342-1346.

Silberstein, S., Inouye, M. and Studier, F.W. (1975). J. Mol. Biol. 96, 1-11.

Singh, J. (1966). Great Ideas in Information Theory, Language and Cybernetics, Dover Publications, Inc., New York.

Singleton, C.K., Roeder, W.D., Bogosian, G., Somerville, R.L. and Weith, H.L. (1980). Nucl. Acids Res. 8, 1551-1560.

Smith, H.O. (1979). Science. 205, 455-462.

Stormo, G.D., Schneider, T.D. and Gold, L.M. (1982a). Nucl. Acid Res. 10, 2971-2996.

Stormo, G.D., Schneider, T.D., Gold, L. and Ehrenfeucht, A. (1982b). Nucl. Acids Res. 10, 2997-3011.

Stormo, G.D. (1985). "Translational Initiation" in Maximizing Gene Expression,

Gold, L. and Reznikoff, W., eds., Benjamin/Cummings Publishing Co., Inc., in press.

Studier, F.W. (1969). Virol. 39, 562-574.

Studier, F.W. (1972). Science. 176, 367-376.

Summers, W.C. and Siegel, R.B. (1970). Nature (London). 228, 1160-1162.

Swift, G., McCarthy, B.J. and Heffron, F. (1981). Mol. Gen. Genet. 181, 441-447.

Tribus, M. and McIrvine, E.C. (1971). Sci. Am. 225 (Sept.), 179-188.

Uhlin, B.E., Völkert, M.R., Clark, A.J., Sancar, A. and Rupp, W.D. (1982). Mol. Gen. Genet. 185, 251-254.

van den Elzen, P.J.M., Maat, J., Walters, H.H.B., Veltkamp, E. and Nijkamp, H.J.J. (1982). Nucl. Acids Res. 10, 1913-1928.

Völker, T.A., Gafner, J., Bickle, T.A. and Showe, M.K. (1982). J. Mol. Biol. 161, 479-489.

von Hippel, P.H. (1979). Biological Regulation and Development, Goldberger, R.F., ed., Plenum Press, New York, Vol. 1, pp. 279-347.

Warner, J.R. (1979). DIGRAF: Device Independent Graphics from FORTRAN, User's Guide Version 2.0, Graphics Development Group, University Computing Center, University of Colorado, Boulder.

Weaver, W. (1949). Sci. Am. 181, 11-15.

Wiberg, J.S. and Karam, J.D. (1983). in Bacteriophage T4, Mathews, C.K., Kutter, E.M., Mosig, G., and Berget, P.B., eds., American Society for Microbiology, pp. 193-201.

Winter, R.B. and von Hippel, P.H. (1981). Biochem. 20, 6948-6960.

Yokota, T., Sugisaki, H., Takanami, M. and Kaziro, Y. (1980). Gene. 12, 25-31.

Young, I.G., Rogers, B.L., Campbell, H.D., Jaworoski, A. and Shaw, D.C. (1981). Eur. J. Biochem. 116, 165-170.

Zavriev, S.K. and Shemyakin, M.F. (1982). Nucl. Acids Res. 10, 1635-1652.

Zolg, J.W. and Haumlautnggi, U.J. (1981). Nucl. Acid Res. 9, 697-710.

Zurawski, G., Gunsalus, R.P., Brown, K.D. and Yanofsky, C. (1981). J. Mol. Biol. 145, 47-73.


next up previous
Next: Figures Up: The Information Content of Previous: Bibliography
Tom Schneider
2002-10-16

U.S. Department of Health and Human Services  |  National Institutes of Health  |  National Cancer Institute  |  USA.gov  | 
Policies  |  Viewing Files  |  Accessibility  |  FOIA