Delila Program: mfoldseq

mfoldseq program

Documentation for the mfoldseq program is below, with links to related programs in the "see also" section.

{   version = 1.10; (* of mfoldseq.p 2005 May 23}

(* begin module describe.mfoldseq *)
   mfoldseq: make seq file for the mfold program

   mfoldseq(book: in, mfoldseqp: in, mfoldsequ, output: out)

   book:  a Delila system book.  The sequences are to be folded.

   mfoldseqp:  parameters to control the program.  The file must contain the
      following parameters, one per line:

      parameterversion: The version number of the program.  This allows the
         user to be warned if an old parameter file is used.

      whichseq: an integer that defines which sequence of the book to
         extract for folding.  If it is zero, convert all sequences.

   mfoldsequ:  the sequences in the format for the mfold program

   mfoldnum:  one integer: whichseq

   output: messages to the user

   Convert a book to the format needed by mfold, which then
   will compute RNA structures.



see also
   Similar parsing program: parse.p
   Gathers results from mfold to make features: mfoldfea.p
   The script that runs mfoldseq and mfoldfea: run.mfold

   Thomas Dana Schneider

technical notes

(* end module describe.mfoldseq *)
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