* bits * scan 3.42 * with matrix from: *********************************************************** *********************************************************** * scan matrix is FROM = -9, TO = 9 * region used for the scan is FROM = -9, TO = 9 **************************************************** * Paramters used by scan: * todo: 2147483647 * cutDNRi: -5.0 * cutUPRi: 2147483647.0 * cutDNZ: 0.0 * cutUPZ: 100.0 * cutDNP: 0.0 * cutUPP: 1.0 * fromwanted: -9 * towanted: 9 * ways: 0 * sitedefinition: define "fur-11M9" " w" " " " " -9.0 9.0 * (no control) * (no control) * (no control) * Ri:4:1 * string: "" bits"" * (no control) * (no control) * (no control) * (no control) * .: end of print definitions * DFi DFI: capitals mean data, scanfeatures, scaninst written * n normalizeRi: n: normal, s: Ri(l)-Ri(0), d: Ri(l)/Ri(0) * -50 50 range to make the scaninst file (if made) **************************************************** * Scan of book: * 2006/10/26 02:29:21, 2006/10/26 02:29:21, exbD * mean = 18.083432 * stdev = 4.104552 * * lowest Ri cutoff = -5.000000 * highest Ri cutoff = 2147483647.000000 * lowest Z cutoff = 0.000000 * highest Z cutoff = 100.000000 * lowest probability = 0.000000 * highest probability = 1.000000 * The sequences in the book will be scanned one way * since the matrix is symmetric * * DEFINITION OF THE DATA COLUMNS: * 1 piece number * 2 piece length * 3 piece name * 4 piece coordinate * 5 matrix orientation (+1 = as in book, -1 = complement) * 6 Ri evaluation (bits per site) * 7 Z * 8 probability * 9 0, meaning: not normalizing Ri * 1 107 exbD 23 1 -4.988864 -5.621148 0.000000 0 1 107 exbD 89 1 -4.988864 -5.621148 0.000000 0 * 2 sites found in piece exbD * 89 positions evaluated * * 2 sites found in this book in * 89 total positions evaluated * 5.4757334310 effective Rfrequency (bits per site)