Delila Program: capsmark

capsmark program

Documentation for the capsmark program is below, with links to related programs in the "see also" section.

{version = 1.02; (* of capsmark.p 1997 October 17}

(* begin module describe.capsmark *)
   capsmark: read sequence; make features for capitalized regions

   capsmark(sequ: in, capsmarkp: in, searchp: out, output: out)

   sequ:  raw DNA sequence in lower case except for objects
      of interest marked in upper case.

   searchp:  search parameters for the capitalized regions

   capsmarkp:  parameters to control the program.  The file must contain the
      following parameters, one per line:

      parameterversion: The version number of the program.  This allows the
         user to be warned if an old parameter file is used.

      name: a string of characters to name the sequence.

   output: messages to the user

   Sequences are often marked by people with capital letters
   to indicate interesting regions (exons, primers, mutations, etc)
   This program creates lister features for a raw sequence.



see also

   Thomas Dana Schneider


technical notes

(* end module describe.capsmark *)
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