Thomas Schneider Bibliography

Thomas D. Schneider *

version = 1.01 of schneider-frederick2014-bib.tex 2014 May 14

*National Institutes of Health, National Cancer Institute, Center for Cancer Research, Gene Regulation and Chromosome Biology Laboratory, P. O. Box B, Frederick, MD 21702-1201. (301) 846-5581, email: schneidt@mail.nih.gov http://alum.mit.edu/www/toms/

Bibliography for my talk “Three Universal Principles of Biological States”

[1]    T. D. Schneider. 70% efficiency of bistate molecular machines explained by information theory, high dimensional geometry and evolutionary convergence. Nucleic Acids Res., 38:5995–6006, 2010. http://alum.mit.edu/www/toms/papers/emmgeo/, http://dx.doi.org/doi:10.1093/nar/gkq389.

[2]    T. D. Schneider. A brief review of molecular information theory. Nano Communication Networks, 1:173–180, 2010. http://alum.mit.edu/www/toms/papers/brmit/, http://dx.doi.org/10.1016/j.nancom.2010.09.002.

[3]    T. D. Schneider. Theory of molecular machines. I. Channel capacity of molecular machines. J. Theor. Biol., 148:83–123, 1991. http://alum.mit.edu/www/toms/papers/ccmm/.

[4]    T. D. Schneider. Theory of molecular machines. II. Energy dissipation from molecular machines. J. Theor. Biol., 148:125–137, 1991. http://alum.mit.edu/www/toms/papers/edmm/.

[5]    T. D. Schneider, G. D. Stormo, L. Gold, and A. Ehrenfeucht. Information content of binding sites on nucleotide sequences. J. Mol. Biol., 188:415–431, 1986. http://alum.mit.edu/www/toms/papers/schneider1986/.

[6]    T. D. Schneider and R. M. Stephens. Sequence logos: A new way to display consensus sequences. Nucleic Acids Res., 18:6097–6100, 1990. http://alum.mit.edu/www/toms/papers/logopaper/.

[7]    T. D. Schneider. Evolution of biological information. Nucleic Acids Res., 28:2794–2799, 2000. http://alum.mit.edu/www/toms/papers/ev/.

[8]    T. D. Schneider. Sequence walkers: a graphical method to display how binding proteins interact with DNA or RNA sequences. Nucleic Acids Res., 25:4408–4415, 1997. http://alum.mit.edu/www/toms/papers/walker/, erratum: NAR 26(4): 1135, 1998.

[9]    T. D. Schneider and J. Spouge. Information content of individual genetic sequences. J. Theor. Biol., 189:427–441, 1997. http://alum.mit.edu/www/toms/papers/ri/.

[10]    I. G. Lyakhov, P. N. Hengen, D. Rubens, and T. D. Schneider. The P1 Phage Replication Protein RepA Contacts an Otherwise Inaccessible Thymine N3 Proton by DNA Distortion or Base Flipping. Nucleic Acids Res., 29:4892–4900, 2001. http://alum.mit.edu/www/toms/papers/repan3/.


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