Results of Genome Scans with Model 1 and Model 3

These are the results of an E. coli genome scan using the two models. Note that Model 3 is on the left and Model 1 is on the right.

The date below the model name is when the scan was done. The columns list the strength of the walker in bits, the coordinate position in the genome of the walker. The regions which have been footprinted are labeled by name.


            Model 3                          Model 1
       2001Jan09.18:51:38        2000Aug15.14:08:51

       bits       position name        bits       position name
    29.319053       637851 dsbG     26.003543       890054 grxA
    27.002242       890054 grxA     23.066328       637851 dsbG
    26.029183       710103 fur      19.451017       638089 ahpC
    22.961429      2467337 O16      19.066905      4131337 katG
    21.802172       638089 ahpC     15.994386      2467337 O16
    19.124647      4603357 fhuF.2   14.526879       710103 fur
    18.257040      4603273 fhuF.1   13.937622       537879
    17.994003      3666966      13.902829      4156029 oxyR
    17.561130      4131337 katG     13.843331      2698016
    17.398897      1762663 sufA     13.708360      1103699
    17.334810      1475504      13.451616        77803
    17.308212      2069355 flu      13.328488       576117
    16.365522      2167805      13.188584      1524021
    16.018299      3266461      13.088919      3266461
    15.815227      3272480      12.714381      3406233
    15.799885      1211333      12.439521      1485303
    15.523548      2698016      12.358236      4071146
    15.501646      1596260      12.310838       848228 dps
    15.322310      4156029 oxyR     12.158836       502543
    15.069787      1118367      11.813813      4603357 fhuF.2
    14.944591      3728709      11.644263      3332953
    14.918538      1994915      11.546151       234431
    14.874270      2771647      11.451015      3947846
    14.870517      4258085      11.416095      1596260
    14.658079      2166305      11.188313      3643862 gorA
    14.318329      1635419      10.995335      2271575
    14.121559      3453098      10.907626      3593705
    14.055865      4350518      10.323916      3749675
    13.943103      2069377      10.194033      2521042
    13.688402      4515863      10.105992      1415530
    13.628378      1489550       9.918595      1994915
    13.487644      3681853       9.901853       231012
    13.334752      1544166       9.837484      1839528
    13.248566      2244987       9.741871      1085734
    13.246112       656380       9.574278       922026
    13.154854       576117       9.532628       621434
    13.136288       944478       9.451618      1762663
    13.123600       848228 dps       9.421495      2069377
    13.095937       578469       9.351479      3358678
    13.084356       852932       9.333633      1489541
    13.077641      4296460       9.329336      4302097
    12.982277      1368411       9.311170      4550475
    12.954409      1389982       9.222528      1408033
    12.818226        77803       9.217730       656380
    12.799185       611898       9.206235      1330089
    12.628675      1103699       9.059875       156283
    12.529726       502543       9.029956       297344
    12.528242      3593705       9.018056      3983883
    12.450230      2772602       8.994962      1675004
    12.424173      2651659       8.978017       931365
    12.298228       479548       8.947564      3630416
    12.239617      2031613       8.902226      3531476
    12.229096      3841565       8.877880       658175
    12.217008      3630416       8.870925      3225447
    12.176737      4324630       8.847587       533499
    12.144058      1635963       8.779596       535444
    12.103564      1493183       8.748296      2244987
    12.095688       922026       8.638414      1771818
    12.057429      3188563       8.632391      3681853
    12.042572      4233311       8.584221      3728709
    12.025494      2536606       8.579923      2823983
    12.004722       480301       8.568097      3766821
    11.974133      3767484       8.556830      1847718
    11.868801       702971       8.556027      3666966
    11.814642       569004       8.555952      1182772
    11.727834      2319358       8.521031      2276485
    11.694173      1168191       8.451346      3372533
    11.624717       578812       8.426668      1307576
    11.590410      3266070       8.416798       527920
    11.586658      3332953       8.410603      1307096
    11.579289      1211342       8.283117       944478
    11.504388      2890067       8.270197      4576205
    11.504320       645627       8.246169      4566311
    11.453055       658175       8.181858      2108946
    11.418465      1210395       8.181629      3579767
    11.411415      2271575       8.157283      3272480
    11.410721      2716640 trxC      8.100272       241909
    11.404771       343562       8.052677      1591880
    11.375150      3920674       8.047430      3235476
    11.363324      3358678       8.037384       294313
    11.362327      2510819       7.989138      2944573
    11.293246       231012       7.913346      3714616
    11.234266      1790014       7.889952      1702592
    11.143020      3077235       7.836534      1635134
    11.097093      3805948       7.832237       889205
    11.057339      4258577       7.830887      3186334
    11.055667       234431       7.761447      2479114
    11.022887      3406233       7.756201      2873890
    10.954410      3544212       7.748671      2284363
    10.869346      2108946       7.714984      2311266
    10.854178      2890135       7.702781       678935
    10.794802      3983883       7.697307      3755850
    10.767777      3749675       7.696127      4045004
    10.766460      1489541       7.667387      2069355 flu
    10.720354      2041060       7.666436      4296460
    10.687077       996893       7.607790      1118367
    10.684527       234101       7.579923      3188563
    10.680634      1675004       7.578372      3901324
    10.678116      1635134       7.497462      1870341
    10.654151      1415530       7.468563      3834348
    10.649326      2599144       7.467716      1648060
    10.610282      2321377       7.467714      2166305
    10.515684      1851197       7.456965      1486214
    10.499979       621434       7.452192       275037
    10.388804      2276485       7.449794      3983887
    10.374165      1787617       7.434273      2597748
    10.360050      3394392       7.322065      4230807
    10.354619       331061       7.292917      1153970
    10.349734      2467723       7.281565      3351897
    10.349251      3358360       7.275071      2635787
    10.323400      3767807       7.270197       570934
    10.323217      2574040       7.228249      2492771
    10.317375      4279637       7.200656      2890067
    10.316914       497211 hemH      7.182132       570133
    10.290150       656371       7.152409      2980448
    10.258967      3694533       7.112345      4558459
    10.240318       527920       7.099972       180362
    10.233378      1687806       7.099670      2599144
    10.119376      1524021       7.088777      3838088
    10.073514      3497043       7.059875      2882272
    10.041496      3579718       7.024481      2288220
    10.011253      1080522       7.018285       659849
     9.997503      2042880       6.995811      3694533
     9.990801      2039282       6.995809      1199634
     9.985232      2481780       6.989488      2813894
     9.965756      1732364       6.988910      1489550
     9.906627      3805690       6.941918      1475504
     9.875347      2983670       6.941314      1211333
     9.863250      3666944       6.923393      4258577
     9.861488      1196867       6.884306      2321377
     9.812792      4302097       6.866384      3134009
     9.808349      1891871       6.853276      3755546
     9.794079      2521042       6.839510       986246
     9.765033      4045004       6.837815       535905
     9.763713       733340       6.812964      2167805
     9.762615       394212       6.801139      4258085
     9.725163      3081965       6.795664       636134
     9.724460      1940632       6.784769      2696427
     9.705045      2032786       6.778346      3984863
     9.695151      2254854       6.766218       656371
     9.691374      2105805       6.764964       135459
     9.682928      1085734       6.744602       702971
     9.682333       645837       6.708802      4204814
     9.677193       147840       6.678208      4327825
     9.664466      2694157       6.673407      3580795
     9.611110      3795826       6.661539      1248167
     9.562712      2000790       6.655487      2105805
     9.562334      2550277       6.632766      3673306
     9.561279      1891889       6.619386      3265630
     9.555415      3184076       6.613967      3723962
     9.543311      3464677       6.596997       338208
     9.518858      3764021       6.578745       651347
     9.482332      1255074       6.554946      2940629
     9.480571      4204814       6.550177       526775
     9.473436      1899937       6.532525       538382
     9.459780      4554170       6.519851      1901019
     9.402280      4249975       6.504331      1159487
     9.392179       565357       6.496757      1842428
     9.388729       537879       6.457842      1226958
     9.378999      1525666       6.428293      3256516
     9.374643      2901911       6.416694      4388617
     9.332326      3431234       6.397522      1883519
     9.308955      3265630       6.363883      1488732
     9.304757      1266398       6.339034      2771647
     9.300866      3632049       6.334738      4341996
     9.262952       617331       6.328386      2211927
     9.239734       156283       6.315712      1095137
     9.226529       678935       6.315638       134336
     9.216367      1485303       6.298393      4238119
     9.178461      1631203       6.282268      2246055
     9.178461      1432141       6.275915       601694
     9.166795       240279       6.262796      2195425
     9.157665      2467674       6.240449      2738056
     9.140331      2993829       6.218129      3714638
     9.125505      3947846       6.211879      1056922
     9.124882      2413033       6.158461       852932
     9.116991       238116       6.146633       258340
     9.110937      3372533       6.145786      2031635
     9.086384      1168178       6.135337      4592686
     9.081712      1570348       6.112343      4420609
     9.071431      4162856       6.075999      3981884
     9.068085      2031635       6.070524      2716640 trxC
     9.046794       651283       6.035603      1894860
     9.040872      3675909       6.030357      3309308
     9.004021       841418       6.018284      1865330
     8.978728      2052219       6.018056      1265260
     8.976939      1388990       6.012809      2066269
     8.971015      2066269       6.005609      4542252
     8.967254      1330089       5.994115      4532136
     8.907026      3903507       5.982889      1270374
     8.899577       558541       5.982288      3649217
     8.899433      4249395       5.965215      2057443
     8.889021      4576205       5.959163       400463
     8.874224      2468257       5.957942       175769
     8.872137      1307096       5.953141      2984900
     8.867474       446910       5.931194      4544717
     8.859741      1408033       5.924573      2651659
     8.846069      1307576       5.919325      3186712
     8.845476       122999       5.913348      1214126
     8.820181      2993165       5.866053      4576071
     8.780737      3567368       5.837484       884986
     8.769181       533499       5.835686       991743
     8.749909      3225447       5.812362       645627
     8.747958      4540215       5.809517      1827468
     8.747510      2784053       5.802215       404578
     8.736140      2040299       5.785821      2196254
     8.725447      2389222       5.784066       569004
     8.713643        42002       5.766848      3544212
     8.705140      1645906       5.745553      3935765
     8.689550       611905       5.743092      1570348
     8.684414      2487802       5.706477      3453098
     8.670978      3351897       5.701850      1614542
     8.656923      4407806       5.679054      2110312
     8.647243      1161843       5.672260      4576058
     8.646505      1753212       5.666351      1368411
     8.644799       538382       5.649136      3986699
     8.636086      2980448       5.638817      1448230
     8.624519      3309308       5.633343       229589
     8.594347       582062       5.631215      1068127
     8.583437      2241798       5.620192      3142117
     8.515341       284339       5.591420       578812
     8.504095      1811309       5.580256      3441651
     8.484825      2784636       5.579925       154418
     8.474675      2901839       5.578744      3192292
     8.470331      3579767       5.567520      2772602
     8.463137      2104592       5.567252       611905
     8.458498      2108328       5.566919      4423391
     8.422325      1030654       5.561672      2991690
     8.414463      4577552       5.548997      3937478
     8.383616      1147464       5.533104      3645339
     8.368122      2053461       5.514377      2481396
     8.348075      3266014       5.508282      1369724
     8.342274       527911       5.503815      2198238
     8.337261      4238119       5.503483      1802963
     8.335447      1870341       5.497464      3328652
     8.333436      2228579       5.479540       265993
     8.331783       294313       5.478665      2940379
     8.330129      1847718       5.467384       582066
     8.324192      3411221       5.452193      2784347
     8.318400      2882272       5.449765      3767807
     8.305224      2284363       5.444663       569552
     8.294112      1229743       5.409399      1424669
     8.272047      3030959       5.404524      3505283
     8.262000      3834348       5.402801      1877073
     8.241127      2890089       5.397222      2570465
     8.239090      1416711       5.380957      4409248
     8.232685      2257647       5.349928      1635419
     8.222042      2990063       5.341162      4567933
     8.219158      4558459       5.340458       396055
     8.215389       889205       5.328384       324393
     8.214316       108290       5.326833      3898285
     8.205681      1803765       5.293765      3579722
     8.197330      3795817       5.292286      4249395
     8.190137       175769       5.286192      2550277
     8.189538       601694       5.268644       967226
     8.188229      3656370       5.262893      4118560
     8.180953      2031604       5.251343       284339
     8.163651      3580795       5.246095      2389222
     8.146049      3579722       5.234097      1790014
     8.138448      1886642       5.233723      4532210
     8.133661      1463156       5.229556      1398976
     8.121339       396055       5.229428      4458515
     8.118028      1666148       5.222529      2703108
     8.117552      3791080       5.211002       295021
     8.090501      3766821       5.209751       778266
     8.090182      4544717       5.204275      4575918
     8.061058      3181532       5.200656      4193672
     8.056626       275037       5.189159      1868819
     8.049946      1901019       5.181183      4531414
     8.031444      1369724       5.175534      1810644
     8.015399      2101724       5.171135       633504
     7.994357      1092236       5.157613       278113
     7.992895      4589104       5.152109       913053
     7.953161       582466       5.147339      2140820
     7.950365      3025800       5.141491      4077176
     7.946119       986491       5.134562      3666948
     7.938654       119427       5.119373      1458696
     7.912267      1199634       5.086894       578469
     7.901991      2584135       5.086346      2478733
     7.901913       134336       5.076245      4478090
     7.872009      3235476       5.076074       394212
     7.856586      3360224       5.069647      3798544
     7.853398      4416071       5.065019      2380075
     7.849326      1499613       5.064775      4097858
     7.842665      2231132       5.047201      3937111
     7.840925      1584689       5.047099      1990787
     7.830890      2783498       5.041625       236526
     7.828595      2027399       5.040852      3003946
     7.827300      1776758       5.036204      2694157
     7.824190      1463233       5.029551       343562
     7.819889      2986424       5.023862      1278421
     7.818789      1787611       5.000982      2182139
     7.797206      3266039
     7.792533      2796963
     7.765702      3694009
     7.758450      2823983
     7.758371      1424997
     7.733025      3292549
     7.720465      1041279
     7.716644      1630884
     7.716644      1432460
     7.716371      3186334
     7.706770      1577495
     7.704864      1636803
     7.703371       338208
     7.695460       400463
     7.679402      3764525
     7.677146      3351827
     7.663376      3530302
     7.657803      1920844
     7.654482      2310927
     7.646940      3951029
     7.643619      1894860
     7.621836       234114
     7.619931       996958
     7.618076      2991690
     7.617793       570133
     7.612476      2085013
     7.611998      4477271
     7.611810      4537664
     7.607314       624069
     7.597967      3284706
     7.594678      3796492
     7.593382      1542491
     7.592197      2589610
     7.586728       258340
     7.581309      2066621
     7.561068       522119
     7.544900      3266709
     7.528763      1891880
     7.519794       451083
     7.515683      1488732
     7.511653      3134583
     7.508901      1019641
     7.495751      3798544
     7.494547      1424204
     7.490873      2487805
     7.462381       997635
     7.460958      3022339
     7.454897       404910
     7.442551      1870545
     7.417365       711269
     7.403426      2901825
     7.403163      4257753
     7.399482      4390398
     7.389427      1463152
     7.387657      1645924
     7.386887      4071146
     7.386692      2154340
     7.383585      4576071
     7.369212      1210416
     7.366160      4327825
     7.361054      1905935
     7.357763      2985186
     7.354511      1073304
     7.353487      3643862 gorA
     7.349369      3802075
     7.345150      3013817
     7.341727      1891862
     7.326031      2872320
     7.325033      1899172
     7.322285      3186712
     7.321933      1622574
     7.317196      3937478
     7.303328      3801838
     7.286679      2909413
     7.275090       297344
     7.262116      3184067
     7.250628      2468266
     7.243604      1771818
     7.241623       660704
     7.239981      2066618
     7.225812       430229
     7.218040      1821298
     7.214842       913053
     7.205879      1363108
     7.200488      3186817
     7.199941      4061869
     7.192774       152245
     7.189691      2247656
     7.189646      2031907
     7.169296      1608739
     7.166196      3264041
     7.164901      3537670
     7.164361      1355169
     7.161849      4135429
     7.158511      4609659
     7.158345      4603251
     7.157984      1424669
     7.154651      4197882
     7.146990      2484368
     7.131932      1635628
     7.128199      4503992
     7.127618      2589163
     7.126613      4000539
     7.126184       624075
     7.111592      3656143
     7.094319      1570121
     7.089129      3382980
     7.088315      4272252
     7.084967      3815409
     7.084682      3736218
     7.059016      1596481
     7.054187      2467192
     7.043631      2550928
     7.043030      3794682
     7.038201      2107606
     7.036514      3714616
     7.033963      2904154
     7.025971      2467751
     7.020016      3266917
     7.016935      4569233
     7.007383      1210391
     7.004597      1869417
     7.001516      1667650
     6.992625       473524
     6.988780      3453074
     6.983002      1218156
     6.976456      4549044
     6.972425      1176632
     6.963627       892330
     6.963456      2479453
     6.954221      3766929
     6.947626      3170143
     6.944492      3186881
     6.944447       296404
     6.941834      2713358
     6.934333       778266
     6.911137      1184988
     6.896460      3023646
     6.889114       418725
     6.880512      2516384
     6.879146      3635658
     6.874548      1790119
     6.868349      1565459
     6.862728      1214627
     6.842962      2813894
     6.839638      4477311
     6.834346      1877073
     6.825954      4335631
     6.823845      3755528
     6.817580       135459
     6.816961      1486214
     6.816429      3328029
     6.807507      4408869
     6.806082       611918
     6.789898      3801819
     6.785550      4506241
     6.783939      2848533
     6.782431      1762583
     6.769628       324393
     6.768182      1868329
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Schneider Lab

origin: 2001 May 31
updated: 2001 June 11
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