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Allikmets et al., 1998
Allikmets, R., Wasserman, W. W., Hutchinson, A., Smallwood, P., Nathans, J., Rogan, P. K., Schneider, T. D. & Dean, M. (1998).
Organization of the ABCR gene: analysis of promoter and splice junction sequences.
Gene, 215, 111-122.

Cover & Thomas, 1991
Cover, T. M. & Thomas, J. A. (1991).
Elements of Information Theory.
John Wiley & Sons, Inc., N. Y.

Gappmair, 1999
Gappmair, W. (1999).
Claude E. Shannon: The 50th anniversary of information theory.
IEEE Communications Magazine, 37 (4), 102-105.

Hartz et al., 1988
Hartz, D., McPheeters, D. S., Traut, R. & Gold, L. (1988).
Extension inhibition analysis of translation initiation complexes.
Meth. Enzym. 164, 419-425.

Hengen et al., 1997
Hengen, P. N., Bartram, S. L., Stewart, L. E. & Schneider, T. D. (1997).
Information analysis of Fis binding sites.
Nucl. Acids Res. 25 (24), 4994-5002.

Herman & Schneider, 1992
Herman, N. D. & Schneider, T. D. (1992).
High information conservation implies that at least three proteins bind independently to F plasmid incD repeats.
J. Bact. 174, 3558-3560.

Kahn et al., 1998
Kahn, S. G., Levy, H. L., Legerski, R., Quackenbush, E., Reardon, J. T., Emmert, S., Sancar, A., Li, L., Schneider, T. D., Cleaver, J. E. & Kraemer, K. H. (1998).
Xeroderma Pigmentosum Group C splice mutation associated with mutism and hypoglycinemia - A new syndrome?
Journal of Investigative Dermatology, 111, 791-796.

Piccirilli et al., 1990
Piccirilli, J. A., Krauch, T., Moroney, S. E. & Benner, S. A. (1990).
Enzymatic incorporation of a new base pair into DNA and RNA extends the genetic alphabet.
Nature, 343, 33-37.

Rogan et al., 1998
Rogan, P. K., Faux, B. M. & Schneider, T. D. (1998).
Information analysis of human splice site mutations.
Human Mutation, 12, 153-171.

Rudd & Schneider, 1992
Rudd, K. E. & Schneider, T. D. (1992).
Compilation of E. coli ribosome binding sites.
In A Short Course in Bacterial Genetics: A Laboratory Manual and Handbook for Escherichia coli and Related Bacteria, (Miller, J. H., ed.), pp. 17.19-17.45, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.

Schneider, 1991a
Schneider, T. D. (1991a).
Theory of molecular machines. I. Channel capacity of molecular machines.
J. Theor. Biol. 148, 83-123.

Schneider, 1991b
Schneider, T. D. (1991b).
Theory of molecular machines. II. Energy dissipation from molecular machines.
J. Theor. Biol. 148, 125-137.

Schneider, 1994
Schneider, T. D. (1994).
Sequence logos, machine/channel capacity, Maxwell's demon, and molecular computers: a review of the theory of molecular machines.
Nanotechnology, 5, 1-18.

Schneider, 1996
Schneider, T. D. (1996).
Reading of DNA sequence logos: prediction of major groove binding by information theory.
Meth. Enzym. 274, 445-455.

Schneider, 1997a
Schneider, T. D. (1997a).
Information content of individual genetic sequences.
J. Theor. Biol. 189 (4), 427-441.

Schneider, 1997b
Schneider, T. D. (1997b).
Sequence walkers: a graphical method to display how binding proteins interact with DNA or RNA sequences.
Nucl. Acids Res. 25, 4408-4415.
http://www.lecb.ncifcrf.gov//paper/walker/, erratum: NAR 26(4): 1135, 1998.

Schneider & Stephens, 1990
Schneider, T. D. & Stephens, R. M. (1990).
Sequence logos: a new way to display consensus sequences.
Nucl. Acids Res. 18, 6097-6100.

Schneider & Stormo, 1989
Schneider, T. D. & Stormo, G. D. (1989).
Excess information at bacteriophage T7 genomic promoters detected by a random cloning technique.
Nucl. Acids Res. 17, 659-674.

Schneider et al., 1986
Schneider, T. D., Stormo, G. D., Gold, L. & Ehrenfeucht, A. (1986).
Information content of binding sites on nucleotide sequences.
J. Mol. Biol. 188, 415-431.

Shannon, 1948
Shannon, C. E. (1948).
A mathematical theory of communication.
Bell System Tech. J. 27, 379-423, 623-656.

Shannon, 1949
Shannon, C. E. (1949).
Communication in the presence of noise.
Proc. IRE, 37, 10-21.

Shultzaberger & Schneider, 1999
Shultzaberger, R. K. & Schneider, T. D. (1999).
Using sequence logos and information analysis of Lrp DNA binding sites to investigate discrepancies between natural selection and SELEX.
Nucleic Acids Res, 27 (3), 882-887.

Sloane & Wyner, 1993
Sloane, N. J. A. & Wyner, A. D. (1993).
Claude Elwood Shannon: Collected Papers.
IEEE Press, Piscataway, NJ.

Staden, 1984
Staden, R. (1984).
Computer methods to locate signals in nucleic acid sequences.
Nucl. Acids Res. 12, 505-519.

Stephens & Schneider, 1992
Stephens, R. M. & Schneider, T. D. (1992).
Features of spliceosome evolution and function inferred from an analysis of the information at human splice sites.
J. Mol. Biol. 228, 1124-1136.

Stormo, 1998
Stormo, G. D. (1998).
Information Content and Free Energy in DNA-Protein Interactions.
J Theor Biol, 195, 135-137.

Tribus, 1961
Tribus, M. (1961).
Thermostatics and Thermodynamics.
D. van Nostrand Company, Inc., Princeton, N. J.

Tribus & McIrvine, 1971
Tribus, M. & McIrvine, E. C. (1971).
Energy and information.
Sci. Am. 225 (3), 179-188.
(Note: the table of contents in this volume incorrectly lists this as volume 224).

Zheng et al., 1999
Zheng, M., Doan, B., Schneider, T. D. & Storz, G. (1999).
OxyR and SoxRS Regulation of fur.
J. Bact, 181, 4639-4643.

Tom Schneider

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