FORM CONTROL FOR SEQUENCE LOGOS

Controls are described in the manual page for makelogo.
   FORM CONTROL FOR SEQUENCE LOGOS
   controlled by parameter formcontrol

   Normal logo (normallogo):
   Note: the sine wavelength is 3.6 amino acids, corresponding to an alpha helix.
   

   Variable logo (varlogo):
   Plot Hmax instead of R(l).
   

   Equal logo (equallogo):
   Equal stack heights. Note that sequence conservation data is lost.
   

   Rare logo: (rarelogo):
   Plot 1-Pi instead of Pi.  Normal stack heights
   

   Rare-Equal logo: (rareequallogo):
   Plot 1-Pi instead of Pi, equal stack heights.
   

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color bar molecular information theory icon


Schneider Lab

origin:    2011 Mar 09
updated: 2011 Apr 05

color bar


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