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Bibliography

1
T. D. Schneider.
New approaches in mathematical biology: Information theory and molecular machines.
In Julian Chela-Flores and Francois Raulin, editors, Chemical Evolution: Physics of the Origin and Evolution of Life, pages 313-321, Dordrecht, The Netherlands, 1996. Kluwer Academic Publishers.

2
J. R. Pierce.
An Introduction to Information Theory: Symbols, Signals and Noise.
Dover Publications, Inc., New York, second edition, 1980.

3
N. J. A. Sloane and A. D. Wyner.
Claude Elwood Shannon: Collected Papers.
IEEE Press, Piscataway, NJ, 1993.

4
T. D. Schneider.
Sequence logos, machine/channel capacity, Maxwell's demon, and molecular computers: a review of the theory of molecular machines.
Nanotechnology, 5:1-18, 1994.
http://www.lecb.ncifcrf.gov//paper/nano2/.

5
P. P. Papp, D. K. Chattoraj, and T. D. Schneider.
Information analysis of sequences that bind the replication initiator RepA.
J. Mol. Biol., 233:219-230, 1993.

6
T. D. Schneider and R. M. Stephens.
Sequence logos: A new way to display consensus sequences.
Nucleic Acids Res., 18:6097-6100, 1990.
http://www.lecb.ncifcrf.gov//paper/logopaper/.

7
T. D. Schneider, G. D. Stormo, L. Gold, and A. Ehrenfeucht.
Information content of binding sites on nucleotide sequences.
J. Mol. Biol., 188:415-431, 1986.

8
T. D. Schneider and G. D. Stormo.
Excess information at bacteriophage T7 genomic promoters detected by a random cloning technique.
Nucleic Acids Res., 17:659-674, 1989.

9
N. D. Herman and T. D. Schneider.
High information conservation implies that at least three proteins bind independently to F plasmid incD repeats.
J. Bacteriol., 174:3558-3560, 1992.

10
C. E. Shannon.
Communication in the presence of noise.
Proc. IRE, 37:10-21, 1949.

11
K. A. S. Immink.
Coding Techniques for Digital Recorders.
Prentice-Hall, Inc., N. Y., 1991.

12
T. D. Schneider.
Theory of molecular machines. I. Channel capacity of molecular machines.
J. Theor. Biol., 148:83-123, 1991.
http://www.lecb.ncifcrf.gov//paper/ccmm/.

13
T. D. Schneider.
Theory of molecular machines. II. Energy dissipation from molecular machines.
J. Theor. Biol., 148:125-137, 1991.
http://www.lecb.ncifcrf.gov//paper/edmm/.

14
J. C. Maxwell.
Theory of Heat.
Longmans, Green and Co., London, 1904.

15
H. S. Leff and A. F. Rex.
Maxwell's Demon: Entropy, Information, Computing.
Princeton University Press, Princeton, N. J., 1990.



Tom Schneider
2000-10-13

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