Delila Program: trex

trex program

Documentation for the trex program is below, with links to related programs in the "see also" section.

{version = 1.02; (* of trex.p 1997 April 22}

(* begin module describe.trex *)
(*
name
   trex: transfac extraction

synopsis
   trex(fin: in, trexp: in, fout: out, fresep, output: out)

files
   fin:  transfac matrix.dat file

   fout:  a single matrix

   fresep:  the single matrix ready to be input to the frese program.

   frebp:  the single matrix ready to be input to the freb program.

   trexp:  parameters to control the program.  The file must contain the
      following parameters, one per line:

      parameterversion: The version number of the program.  This allows the
         user to be warned if an old parameter file is used.

      the id of the matrix to extract

   output: messages to the user

description

   Extract a matrix from the transfac database for further processing.

   Id's that end in '_C' are consindex matrices and cannot be used
   because they do not contain n(b,l) data.

examples

documentation

   http://transfac.gbf-braunschweig.de/TRANSFAC/doc31/toc.html
   ftp://transfac.gbf-braunschweig.de/pub/transfac/ascii/

see also
   frese.p, freb.p

author
   Thomas Dana Schneider

bugs

technical notes

*)
(* end module describe.trex *)
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