Delila Program: transpose

transpose program

Documentation for the transpose program is below, with links to related programs in the "see also" section.

{   version = 1.05; (* of transpose.p 2012 Mar 14}

(* begin module describe.transpose *)
(*
name
   transpose: transpose a matrix of integers

synopsis
   transpose(fin: in, transposep: in, fout: out, output: out)

files

   fin: A file containing five lines.
      The first line is the name of the site.  The remaining four
      lines are the numbers of A, C, G and T
      at each position in an aligned set of sequences.  Words
      in the file that do not begin with a number are dropped

   fout:  The transpose of the file with numbering in the first colum.
      This output is ready for conversion to a Delila book by the freb
      program.

   transposep:  parameters to control the program.  The file must contain the
      following parameters, one per line:

      parameterversion: The version number of the program.  This allows the
         user to be warned if an old parameter file is used.

      width (integer): width of output numbers

      decimal (integer): decimal places of output numbers

      zerobase (integer): base that should have the zero coordinate

   output: messages to the user

description

   Convert a table of numbers given as four rows into four columns.

examples

documentation

see also

   freb.p

author

   Thomas Dana Schneider

bugs

technical notes

   The largest number of items in a row is given by constant maxstore.

*)
(* end module describe.transpose *)
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