Delila Program: mutseq

mutseq program

Documentation for the mutseq program is below, with links to related programs in the "see also" section.

{   version = 1.03; (* of mutseq.p 2004 Jun 29}

(* begin module describe.mutseq *)
(*
name
   mutseq: mutate a sequence

synopsis
   mutseq(sequseed: in, mutseqp: in, output: out)

files

   sequseed:  DNA sequence and seed.  The first line contains
      a sequence of only the characters [acgt].  The second line
      contains a random number seed between 0 and 1.
      The sequence may be of any length less than constant maxsequ.

   mutseqp:  parameters to control the program.  The file must contain the
      following parameters, one per line:

      parameterversion: The version number of the program.  This allows the
         user to be warned if an old parameter file is used.

      If the first line contains 'v' then the program will
      show the steps it used, verbose mode.

   output: messages to the user

description

   The program reads in a DNA sequence and a random number seed (a
   real number between 0 and 1) from the sequseed file.  It makes a
   new random number seed and then uses that to select a base to
   modify and a base to modify it to.  The result is written back out
   to the sequseed file.

examples

   An example mutseqp parameter file:

1.00  version of mutseq that this parameter file is designed for.
verbose mode

   An example sequseed file:

agttatactc
 0.82911751563182178870

documentation

see also

   Another random sequence generator program: markov.p

author

   Thomas Dana Schneider

bugs

technical notes

   maxsequ is a constant in the program.

*)
(* end module describe.mutseq *)
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