Delila Program: histan

histan program

Documentation for the histan program is below, with links to related programs in the "see also" section.

{version = 4.22;  (* of histan.p 1994 sep 5}

(* begin module describe.histan *)
(*
name
      histan: histogram analysis.

synopsis
      histan(hst: in, cmp: in, chisq: out, output: out)

files
      hst: the histogram input; is the output of program hist;
      cmp: a composition input; is the output of program comp;
      chisq: the chi-squared analysis output;
      output: for user messages;

description
      histan determines the chi-squared values at each position for a
      histogram.  the observed values come from the histogram.  if a
      composition is provided the expected values come from that, otherwise
      the expected values assume equal frequencies of all bases.  the
      chisquared is calculated for each level of oligonucleotide (i.e.,
      monos, dis, tris) for which the histogram data exists.

see also
      hist.p, comp.p

author
      gary stormo

bugs
      none known
*)
(* end module describe.histan *)
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