Delila Program: freb

freb program

Documentation for the freb program is below, with links to related programs in the "see also" section.

{   version = 1.18; (* of freb.p 2010 Nov 15}

(* begin module describe.freb *)
(*
name
   freb: frequency table to Delila book

synopsis
   freb(frebp: in, book: out, output: out)

files

   frebp: input frequency table (parameters to the program)

     The first line is the name of the site.

     The following lines each have a set of numbers, 5 per line,
     representing first the coordinate and then the numbers of a,c,g
     and t to use.

     If the numbers are integers, then those integers are used to
     create the sequences.  The numbers can be real in which case the
     smallest power of 10 multiplier is used to make the numbers
     integer.

   book: sequences which could have produced the frebp frequencies,
     in Delila book format.

   output: messages to the user

description

   The freb program converts a table of frequencies to a set of
   aligned sequences so they may be analyzed.  The raw sequences have
   the same frequencies, but, of course, are not the same as the
   original sequences.

examples

documentation

see also
   program to create a sequence set from a table: frese.p
   program to create a book: makebk.p
   program to transpose the table: transpose.p

   example parameter file: frebp

author
   Thomas Dana Schneider

bugs

technical notes

*)
(* end module describe.freb *)
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