{version = 1.03; (* of exponential.p 2003 Aug 22} (* begin module describe.exponential *) (* name exponential: create an exponential curve for binding site separtions synopsis exponential(exponentialp: in, exponentialdata: out, output: out) files exponentialp: parameters to control the program. The file must contain the following parameters, one per line: parameterversion: The version number of the program. This allows the user to be warned if an old parameter file is used. G (integer): size of the genome. n (integer): number of sites on the genome. maxdist (integer): largest distance to compute exponentialdata: The number of sites predicted at spacings from 1 to maxdist. description For a given genome of size G and a set of sites n, give the distribution of spacings between sites. let p = n/G be the probability of a Fis site at a base. let q = (1-p) be the probability that a Fis site is not at a base Then the probability of having two fis sites separated by a distance d is p(q^d)p = p^2(q^d). Therefore the number of fis sites separated by exactly a distance d with no others between is Gp^2((1-p)^d). This is equivalent to dropping n sites randomly into the range between 1 and G. Sort these and compute the distances between them. Tabulate the distribution of these distances. examples documentation see also Use random numbers to simulate this process: spray.p author Thomas Dana Schneider bugs technical notes *) (* end module describe.exponential *) {This manual page was created by makman 1.44}{created by htmlink 1.55}