Delila Program: ckhelix

ckhelix program

Documentation for the ckhelix program is below, with links to related programs in the "see also" section.

{   version = 1.03; (* of ckhelix.p 2004 Sep 12}

(* begin module describe.ckhelix *)
(*
name
   ckhelix: check that the helix location is where one wants

synopsis
   ckhelix(makelogop: in, ckhelixp: in, output: out);

files
   makelogop: the parameter file of the makelogo program
   ckhelixp:
      wave location: the point in bases on THIS logo which is to
         align with the other logos.
         NOTE:  this is NOT necessarily the high or low point
         of the wave as given by the wave parameter file of the
         makelogo program, hence it is not read from that file.
      zero:  location of the desired center in cm on the page
   output: messages to the user

description

   The program is used to determine the position to place a sequence
logo so that a particular point of the cosine wave (in bases of the
nucleic acid coordinate system) is exactly at a given point on the
page in cm.  This allows one to adjust the location of the logos so
that they can overlap.

examples

documentation

see also

author
   Thomas Dana Schneider

bugs

technical notes

*)
(* end module describe.ckhelix *)
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